The grid cell code (part 1)

In this three-part article I will:

  1. explain a little about what grid cells are,
  2. summarise some of the current ideas about how they might be used to code an animal’s location, and
  3. discuss some of the many unanswered questions surrounding this fascinating neural coding scheme.

In 2005, Torkel Hafting and Marianne Fyhn permanently changed the neuroscience of spatial navigation by discovering the grid cell. In their seminal Nature paper, the Moser lab reported that certain cells in the rat medial entorhinal cortex (MEC) fire action potentials only when the animal occupies certain locations in space. When you map at these locations from above, they look suspiciously like a 2-D triangular grid which appears to tile any sized area. The grid persists when the rat is placed into a new environment, and even when it is kept in the dark. It is an internal, metric representation of space. To me at least, this is stunning.

The image below is a beautiful example recording. On the left, the black trace is the path of the rat over a few minutes roaming inside a 1m by 1m box, and the red dots are where the cell fired. The right image is a colour-coded map of the firing rate of the same cell. Note the triangular grid pattern. I know it’s not perfect, but in biology this is about as orderly as things get.

example grid cell firing pattern

(I stole this image from the excellent Scholarpedia article on grid cells by Mr and Mrs Moser. I highly recommend it, along with their recent Annual Review of Neuroscience paper, for great overviews and more references.)

Along with simply reporting their discovery, the Moser group went on to describe the properties of these grids in some detail. They found that, in general, neighbouring grid cells don’t have overlapping firing fields. Although the grids of nearby neurons do usually have the same spacing and rotation, their firing patterns are typically shifted with respect to each other, in a seemingly random way. This means that if you were to collect the output from enough neighboring grid cells, then at any given moment in time and no matter where the rat is in space, some, but not all of these cells will be firing. You (or a downstream neural circuit) could potentially use this information to track the rat’s relative position within this ‘cognitive map’.

Although the repeating grid pattern might be considered aesthetically pleasing, one problem with this type of coding scheme is that it provides only ambiguous information about the rat’s position. Each neuron fires at a (presumably) infinite number of locations in space, so how could this code ever be used to represent a unique position? One clue to a possible solution lay in the topographic relationship the Mosers uncovered between the spacing of a given cell’s grid pattern and its physical location in the MEC. More dorsal cells (toward the top of the head) were found to have progressively smaller grid spacing than more ventral cells (away from the top of the head). When grid spacing is plotted against dorso-ventral location it looks roughly proportional. See the below figure for some examples (taken from McNaughton et al, 2006). The more dorsal cells (toward the upper part of the image) have smaller grid spacing.

Hafting et al suggested that a unique location could be represented by “integrating over grids with different spacing and orientation”. If you look at the above image you can see that there are very few locations in space where all three cells would be simultaneously firing. If you now imagine looking at the firing fields of 50 or 100 or 500 of these cells there might be only one or two locations in a very big area where all the cells would be firing together. In this way a population of grid cells could code for a single specific location, even though their individual activity is ambiguous. The Mosers and other groups have since elaborated on this idea to suggest that the place cells found in the hippocampus are formed by summing the output from many grid cells (see Solstad et al, 2006).

So why this unusual coding scheme? Why has evolution favoured this surprising triangular grid representation? No-one really knows for sure, but, of course, people have ideas. There are a few things we can already conclude, even without knowing anything about how the grids are generated and with only scant knowledge on how the information is subsequently used in other parts of the rodent brain. I will discuss all of this, and more, in the part 2 of the article.

Refs:

  • Microstructure of a spatial map in the entorhinal cortex.
    Torkel Hafting, Marianne Fyhn, Sturla Molden, May-Britt Moser, Edvard I Moser.
    Nature (2005) 436 (7052), 801-6
    PMID: 15965463
  • Grid Cells.
    Edvard Moser, May-Britt Moser.
    Scholarpedia (2007), 2(7):3394

    http://www.scholarpedia.org/article/Grid_cells

  • Place Cells, Grid Cells, and the Brain’s Spatial Representation System.
    E Moser, E Kropff, M Moser.
    Annu Rev Neurosci (2008) 31, 69-89
    PMID: 18284371
  • Path integration and the neural basis of the ‘cognitive map’.
    Bruce L McNaughton, Francesco P Battaglia, Ole Jensen, Edvard I Moser, May-Britt Moser.
    Nat Rev Neurosci (2006) 7 (8), 663-78
    PMID: 16858394
  • From grid cells to place cells: a mathematical model.
    Trygve Solstad, Edvard I Moser, Gaute T Einevoll.
    Hippocampus (2006) 16 (12), 1026-31
    PMID: 17094145

7 Responses to “The grid cell code (part 1)”

  1. Andy McKenzie Says:

    Hi Cian, I found your posts through del.icio.us and have read them all. You are a thorough writer! I couldn’t find your contact info anywhere, so I am forced to leave a comment. My question is, what is your image policy? Do you receive permission to post these pictures, or just figure that it’s educational and doesn’t matter? I’m not on a witch hunt here, I just have a blog myself and I’m wondering what rules I should follow. If you could e-mail me at amckenz(at)gmail(dot)com that would be awesome. Thanks.

  2. Ryan Morehead Says:

    Great post! I’m writing on a similar topic and I’m surprised you didn’t use the Mosers’ 2008 annual review article as a reference.

    http://arjournals.annualreviews.org/doi/abs/10.1146/annurev.neuro.31.061307.090723

    I don’t know if it’s available to you or not, but if you can’t get it and wanted to take a look just let me know.

  3. Cian Says:

    Thanks for the tip Ryan. I have indeed read the Mosers’ review. I guess I could have referred to it, but I thought that most of the relevant information on grid cells is already in the Scholarpedia entry – which is freely available to all. Saying that, there is a nice discussion on the current models of grid formation which is not covered too well in SP. Plus there are plenty more further references for people to follow up.

    I’ll update the post with the extra ref. Cheers.

  4. Cian Says:

    I contacted Adam directly by email about this, but just in case anyone is curious my image policy is:

    I realise that some of the images I use are copyright. I’m not saying that this is OK, but:
    - I always refer back to the originial source (and include a detailed reference at the end if necessary).
    - I am not plagurising or parodying anyone else’s original work.
    - This is not a formal publication, so if need be I can always remove the images at a later stage.
    - I am definitely not using them for profit.

    Does anyone know of any blogs which have had to deal with this kind of thing?

  5. Ryan Morehead Says:

    There was an incident with Wiley and a scienceblogger that was chronicled here: http://scienceblogs.com/clock/2007/04/fair_use_and_open_science.php

    Generally speaking I believe fair use states that if you aren’t making money off of it, there’s no problem with using pictures or figures as long as you cite the source.

  6. Mireille Sprung Says:

    Interesting read. There is currently quite a lot of information around this subject around and about on the net and some are most defintely better than others. You have caught the detail here just right which makes for a refreshing change – thanks.

  7. Fred Says:

    thank you, very interesting idea

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